2022-06-28: D-Genies was updated to version 1.4

Launch map analysis

New alignment
Plot alignment
Batch alignments
Repeatedness 

- or -

Possible values for tool and options keys
Tool Option ids (to use with options=)3
Minimap2 v2.24
(tool=minimap2)
  • Repeatedness (mutually exclusive):
    • 0-0: few repeats 
    • 0-1: some repeats 
    • 0-2: many repeats 
Mashmap v2.0
(tool=mashmap)
No option

1 We will send you results by mail.

2 Can be gzipped. Must end with .fa, .fasta, .fna, .fa.gz, .fasta.gzor .fna.gz

2 In PAF or MAF format. Must end with .paf, .maf

3 Fasta file or index built by our tool. Must end with .fa, .fasta, .fna, .fa.gz, .fasta.gz, .fna.gz or .idx.

4 TAR file from a previous run or built following this documentation. Must ends with .tar or .tar.gz.

2 Text file following batch format. Must end with .txt

3 Look at the batch format page for full description. Default options appear in bold